Publications

* Indicates shared first authorship.

2020

J. Xu*, A. K. Jahromi*, J. Brake*, J. E. Robinson, C. Yang. “Interferometric speckle visibility spectroscopy (ISVS) for human cerebral blood flow monitoring.” APL Photonics 5, 126102 (2020). doi:10.1063/5.0021988

K. Pezeshki, C. Norfleet, E. Meike, T. Jenrungrot, M. Spencer, J. Brake, D. Harris. “A Board and Projects for an FPGA/Microcontroller-Based Embedded Systems Lab.” In Proceedings of 2020 Great Lakes Symposium on VLSI (GLSVLSI’20), September 7–9, 2020, Virtual Event, China. ACM, New York, NY, USA (2020). doi:10.1145/3386263.3406930

Y. Huang, M. Cua, J. Brake, Y. Liu, C. Yang. “Investigating ultrasound–light interaction in scattering media.” Journal of Biomedical Optics 25(2), 025002 (2020). doi:10.1117/1.JBO.25.2.025002

2018

M. Jang*, Y. Horie*, A. Shibukawa*, J. Brake, Y. Liu, S. M. Kamali, A. Arbabi, H. Ruan, A. Faraon, and C. Yang. “Complex wavefront shaping with disorder-engineered metasurfaces.” Nature Photonics 12(2), 84-91 (2018). doi:10.1038/s41566-017-0078-z

2017

H. Ruan*, J. Brake*, J. E. Robinson, Y. Liu, M. Jang, C. Xiao, C. Zhou, V. Gradinaru, and C. Yang. “Deep tissue optical focusing for optogenetic applications with time-reversed ultrasonically encoded light.” Science Advances 3(12), eaao5520(2017). doi: 10.1126/sciadv.aao5520

H. Ruan, T. Haber, Y. Liu, J. Brake, J. Kim, J. M. Berlin, and C. Yang. “Focusing light inside scattering media with magnetic-particle-guided wavefront shaping.” Optica 4(11), 1337-1343 (2017). doi: 10.1364/OPTICA.4.001337

M.M. Qureshi*, J. Brake*, H.-J. Jeon, H. Ruan, Y. Liu, A. M. Safi, T. J. Eom, C. Yang, E. Chung. “In vivo study of optical speckle decorrelation time across depths in the mouse brain.” Biomedical Optics Express 8(11), 4855-4864 (2017). doi:10.1364/BOE.8.004855

2016

E.H. Zhou, A. Shibukawa, J. Brake, H. Ruan, C. Yang. “Glare suppression by coherence gated negation.” Optica 3(10),1107-1113 (2016). doi: 10.1364/OPTICA.3.001107

J. Brake*, M. Jang*, and C. Yang. “Analyzing the relationship between decorrelation time and tissue thickness in acute rat brain slices using multispeckle diffusing wave spectroscopy,” Journal of the Optical Society of America A 33(2), 270-75 (2016). doi: 10.1364/JOSAA.33.000270

2015

D. Wang, E.H. Zhou, J. Brake, H. Ruan, M. Jang, and C. Yang. “Focusing through dynamic tissue with millisecond digital optical phase conjugation,” Optica 2(8), 728-735 (2015). doi: 10.1364/OPTICA.2.000728

Books

2012

J. Brake. “The Engineer’s Guide to Introductory Circuit Analysis.” New York: McGraw-Hill, 2012.

Patents

2012

Glare suppression through fog by optical phase conjugation assisted active cancellation US10194100B2

Presentations

2019

J. Brake, J. Xu, A.K. Jahromi, and C. Yang. “Interferometric speckle visibility spectroscopy for improved measurement of blood flow dynamics.” Engineering Conferences International: Advances in Optics for Biotechnology, Medicine and Surgery XVI. Mont Tremblant, Quebec, Canada, June 2019.

J. Brake and C. Yang. “Optical Scattering in Biomedicine: Friend and Foe?” Physics of Quantum Electronics. Snowbird, Utah, January 2019.

2018

J. Brake, H. Ruan, J. E. Robinson, Y. Liu, V. Gradinaru, and C. Yang. “Deep-Tissue Optical Focusing for Optogenetics Using Wavefront Shaping.” Gordon Research Seminar: Image Science. Easton, MA, June 2018.

J. Brake, H. Ruan, J. E. Robinson, Y. Liu, V. Gradinaru, and C. Yang. “Time-reversed ultrasonically encoded (TRUE) focusing for deep-tissue optogenetic modulation.” SPIE Photonics West, BiOS. San Francisco, CA, January 2018.

2017

J. Brake. “Wavefront shaping in living tissue.” Engineering Conferences International: Advances in Optics for Biotechnology, Medicine and Surgery XV. Aspen, CO, July 2017.

2016

J. Brake, M. Jang, and C. Yang. “The relationship between decorrelation time and sample thickness in acute rat brain tissue slices.” SPIE Photonics West, BiOS. San Francisco, CA, February 2016.

2015

S. Cho, J. Brake, C. Joy, and S. Kim. “Refractive index measurement using an optical cavity based biosensor with a differential detection.” SPIE Photonics West, BiOS. San Francisco, CA, February 2015.